species:   Rhsol
pid:       PID0541
parent:    Rhi-milR-58
paralog:   
locus:     KB317721.1:245781-245852
matures:   ['CGUGAACGAGAACGAGAGCGGG', 'CGCGAACGUGAACGUGAACGCGAC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317721.1:245781-245852

0 out of bounds
7 alignments
7 proper strand
7 stranded perfect matches

       **************************       ****************************    
UUCGGCCAUUCGUGAACGAGAACGAGAGCGGGAUUCGAUGCCCCGCGAACGUGAACGUGAACGCGACCUGAU
.((((....(((((.(((...(((...(((((.........)))))...)))...)))...))))).)))).
----------CGUGAACGAGAACGAGAGCGGG---------------------------------------- l=22 a=0 c
-------------------------------------------CGCGAACGUGAACGUGAACGCGAC----- l=24 a=0 c*
---------UCGUGAACGAGAACGAGAGCGGGA--------------------------------------- l=24 a=2 ma
------------------------------------------CCGCGAACGUGAACGUGAACGCGACC---- l=26 a=0 ma*

--------UUCGUGAACGAGAACGAGAGCGGGAUUC------------------------------------ l=28 a=1 
---------UCGUGAACGAGAACGAGAGCGGGA--------------------------------------- l=24 a=2 (ma)
---------UCGUGAACGAGAACGAGAGCGGGAU-------------------------------------- l=25 a=1 
----------CGUGAACGAGAACGAGAGCGGGAU-------------------------------------- l=24 a=2 
-----------GUGAACGAGAACGAGAGCGGGAUUC------------------------------------ l=25 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101110
fn-111
